It can be challenging to develop a neural network predictive model for a new dataset.

One tideway is to first inspect the dataset and develop ideas for what models might work, then explore the learning dynamics of simple models on the dataset, then finally develop and tune a model for the dataset with a robust test harness.

This process can be used to develop constructive neural network models for nomenclature and regression predictive modeling problems.

In this tutorial, you will discover how to develop a Multilayer Perceptron neural network model for the Wood’s Mammography nomenclature dataset.

After completing this tutorial, you will know:

- How to load and summarize the Wood’s Mammography dataset and use the results to suggest data preparations and model configurations to use.
- How to explore the learning dynamics of simple MLP models on the dataset.
- How to develop robust estimates of model performance, tune model performance and make predictions on new data.

Let’s get started.

## Tutorial Overview

This tutorial is divided into 4 parts; they are:

- Woods Mammography Dataset
- Neural Network Learning Dynamics
- Robust Model Evaluation
- Final Model and Make Predictions

## Woods Mammography Dataset

The first step is to pinpoint and explore the dataset.

We will be working with the “*mammography*” standard binary nomenclature dataset, sometimes tabbed “*Woods Mammography*“.

The dataset is credited to Kevin Woods, et al. and the 1993 paper titled “Comparative Evaluation Of Pattern Recognition Techniques For Detection Of Microcalcifications In Mammography.”

The focus of the problem is on detecting breast cancer from radiological scans, specifically the presence of clusters of microcalcifications that towards unexceptionable on a mammogram.

There are two classes and the goal is to distinguish between microcalcifications and non-microcalcifications using the features for a given segmented object.

**Non-microcalcifications**: negative case, or majority class.**Microcalcifications**: positive case, or minority class.

The Mammography dataset is a widely used standard machine learning dataset, used to explore and demonstrate many techniques planned specifically for imbalanced classification.

**Note**: To be crystal clear, we are NOT “*solving breast cancer*“. We are exploring a standard nomenclature dataset.

Below is a sample of the first 5 rows of the dataset

0.23001961,5.0725783,-0.27606055,0.83244412,-0.37786573,0.4803223,’-1′ 0.15549112,-0.16939038,0.67065219,-0.85955255,-0.37786573,-0.94572324,’-1′ -0.78441482,-0.44365372,5.6747053,-0.85955255,-0.37786573,-0.94572324,’-1′ 0.54608818,0.13141457,-0.45638679,-0.85955255,-0.37786573,-0.94572324,’-1′ -0.10298725,-0.3949941,-0.14081588,0.97970269,-0.37786573,1.0135658,’-1′ … |

You can learn increasingly well-nigh the dataset here:

We can load the dataset as a pandas DataFrame directly from the URL; for example:

# load the mammography dataset and summarize the shape from pandas import read_csv # pinpoint the location of the dataset url = ‘https://raw.githubusercontent.com/jbrownlee/Datasets/master/mammography.csv’ # load the dataset df = read_csv(url, header=None) # summarize shape print(df.shape) |

Running the example loads the dataset directly from the URL and reports the shape of the dataset.

In this case, we can personize that the dataset has 7 variables (6 input and one output) and that the dataset has 11,183 rows of data.

This a modest sized dataset for a neural network and suggests that a small network would be appropriate.

It moreover suggests that using k-fold cross-validation would be a good idea given that it will requite a increasingly reliable estimate of model performance than a train/test split and considering a each model will fit in seconds instead of hours or days with the largest datasets.

(11183, 7) |

Next, we can learn increasingly well-nigh the dataset by looking at summary statistics and a plot of the data.

1 2 3 4 5 6 7 8 9 10 11 12 | # show summary statistics and plots of the mammography dataset from pandas import read_csv from matplotlib import pyplot # pinpoint the location of the dataset url = ‘https://raw.githubusercontent.com/jbrownlee/Datasets/master/mammography.csv’ # load the dataset df = read_csv(url, header=None) # show summary statistics print(df.describe()) # plot histograms df.hist() pyplot.show() |

Running the example first loads the data surpassing and then prints summary statistics for each variable.

We can see that the values are often small with ways tropical to zero.

0 1 … 4 5 count 1.118300e 04 1.118300e 04 … 1.118300e 04 1.118300e 04 mean 1.096535e-10 1.297595e-09 … -1.120680e-09 1.459483e-09 std 1.000000e 00 1.000000e 00 … 1.000000e 00 1.000000e 00 min -7.844148e-01 -4.701953e-01 … -3.778657e-01 -9.457232e-01 25% -7.844148e-01 -4.701953e-01 … -3.778657e-01 -9.457232e-01 50% -1.085769e-01 -3.949941e-01 … -3.778657e-01 -9.457232e-01 75% 3.139489e-01 -7.649473e-02 … -3.778657e-01 1.016613e 00 max 3.150844e 01 5.085849e 00 … 2.361712e 01 1.949027e 00 |

A histogram plot is then created for each variable.

We can see that perhaps most variables have an exponential distribution, and perhaps variable 5 (the last input variable) is Gaussian with outliers/missing values.

We may have some goody in using a power transform on each variable in order to make the probability distribution less skewed which will likely modernize model performance.

It may be helpful to know how imbalanced the dataset unquestionably is.

We can use the Counter object to count the number of examples in each class, then use those counts to summarize the distribution.

The well-constructed example is listed below.

1 2 3 4 5 6 7 8 9 10 11 12 13 | # summarize the matriculation ratio of the mammography dataset from pandas import read_csv from collections import Counter # pinpoint the location of the dataset url = ‘https://raw.githubusercontent.com/jbrownlee/Datasets/master/mammography.csv’ # load the csv file as a data frame dataframe = read_csv(url, header=None) # summarize the matriculation distribution target = dataframe.values[:,–1] counter = Counter(target) for k,v in counter.items(): per = v / len(target) * 100 print(‘Class=%s, Count=%d, Percentage=%.3f%%’ % (k, v, per)) |

Running the example summarizes the matriculation distribution, confirming the severe matriculation imbalanced with approximately 98 percent for the majority matriculation (no cancer) and approximately 2 percent for the minority matriculation (cancer).

Class=’-1′, Count=10923, Percentage=97.675% Class=’1′, Count=260, Percentage=2.325% |

This is helpful considering if we use nomenclature accuracy, then any model that achieves an verism less than well-nigh 97.7% does not have skill on this dataset.

Now that we are familiar with the dataset, let’s explore how we might develop a neural network model.

## Neural Network Learning Dynamics

We will develop a Multilayer Perceptron (MLP) model for the dataset using TensorFlow.

We cannot know what model tracery of learning hyperparameters would be good or weightier for this dataset, so we must experiment and discover what works well.

Given that the dataset is small, a small batch size is probably a good idea, e.g. 16 or 32 rows. Using the Adam version of stochastic gradient descent is a good idea when getting started as it will automatically transmute the learning rate and works well on most datasets.

Before we evaluate models in earnest, it is a good idea to review the learning dynamics and tune the model tracery and learning configuration until we have stable learning dynamics, then squint at getting the most out of the model.

We can do this by using a simple train/test split of the data and review plots of the learning curves. This will help us see if we are over-learning or under-learning; then we can transmute the configuration accordingly.

First, we must ensure all input variables are floating-point values and encode the target label as integer values 0 and 1.

... # ensure all data are floating point values X = X.astype(‘float32’) # encode strings to integer y = LabelEncoder().fit_transform(y) |

Next, we can split the dataset into input and output variables, then into 67/33 train and test sets.

We must ensure that the split is stratified by the matriculation ensuring that the train and test sets have the same distribution of matriculation labels as the main dataset.

... # split into input and output columns X, y = df.values[:, :–1], df.values[:, –1] # split into train and test datasets X_train, X_test, y_train, y_test = train_test_split(X, y, test_size=0.5, stratify=y, random_state=1) |

We can pinpoint a minimal MLP model.

In this case, we will use one subconscious layer with 50 nodes and one output layer (chosen arbitrarily). We will use the ReLU vivification function in the subconscious layer and the “*he_normal*” weight initialization, as together, they are a good practice.

The output of the model is a sigmoid vivification for binary classification and we will minimize binary cross-entropy loss.

... # pinpoint model model = Sequential() model.add(Dense(50, activation=‘relu’, kernel_initializer=‘he_normal’, input_shape=(n_features,))) model.add(Dense(1, activation=‘sigmoid’)) # compile the model model.compile(optimizer=‘adam’, loss=‘binary_crossentropy’) |

We will fit the model for 300 training epochs (chosen arbitrarily) with a batch size of 32 considering it is a modestly sized dataset.

We are fitting the model on raw data, which we think might be a good idea, but it is an important starting point.

... history = model.fit(X_train, y_train, epochs=300, batch_size=32, verbose=0, validation_data=(X_test,y_test)) |

At the end of training, we will evaluate the model’s performance on the test dataset and report performance as the nomenclature accuracy.

... # predict test set yhat = model.predict_classes(X_test) # evaluate predictions score = accuracy_score(y_test, yhat) print(‘Accuracy: %.3f’ % score) |

Finally, we will plot learning curves of the cross-entropy loss on the train and test sets during training.

... # plot learning curves pyplot.title(‘Learning Curves’) pyplot.xlabel(‘Epoch’) pyplot.ylabel(‘Cross Entropy’) pyplot.plot(history.history[‘loss’], label=‘train’) pyplot.plot(history.history[‘val_loss’], label=‘val’) pyplot.legend() pyplot.show() |

Tying this all together, the well-constructed example of evaluating our first MLP on the cancer survival dataset is listed below.

1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 | # fit a simple mlp model on the mammography and review learning curves from pandas import read_csv from sklearn.model_selection import train_test_split from sklearn.preprocessing import LabelEncoder from sklearn.metrics import accuracy_score from tensorflow.keras import Sequential from tensorflow.keras.layers import Dense from matplotlib import pyplot # load the dataset path = ‘https://raw.githubusercontent.com/jbrownlee/Datasets/master/mammography.csv’ df = read_csv(path, header=None) # split into input and output columns X, y = df.values[:, :–1], df.values[:, –1] # ensure all data are floating point values X = X.astype(‘float32’) # encode strings to integer y = LabelEncoder().fit_transform(y) # split into train and test datasets X_train, X_test, y_train, y_test = train_test_split(X, y, test_size=0.5, stratify=y, random_state=1) # determine the number of input features n_features = X.shape[1] # pinpoint model model = Sequential() model.add(Dense(50, activation=‘relu’, kernel_initializer=‘he_normal’, input_shape=(n_features,))) model.add(Dense(1, activation=‘sigmoid’)) # compile the model model.compile(optimizer=‘adam’, loss=‘binary_crossentropy’) # fit the model history = model.fit(X_train, y_train, epochs=300, batch_size=32, verbose=0, validation_data=(X_test,y_test)) # predict test set yhat = model.predict_classes(X_test) # evaluate predictions score = accuracy_score(y_test, yhat) print(‘Accuracy: %.3f’ % score) # plot learning curves pyplot.title(‘Learning Curves’) pyplot.xlabel(‘Epoch’) pyplot.ylabel(‘Cross Entropy’) pyplot.plot(history.history[‘loss’], label=‘train’) pyplot.plot(history.history[‘val_loss’], label=‘val’) pyplot.legend() pyplot.show() |

Running the example first fits the model on the training dataset, then reports the nomenclature verism on the test dataset.

**Note**: Your results may vary given the stochastic nature of the algorithm or evaluation procedure, or differences in numerical precision. Consider running the example a few times and compare the stereotype outcome.

In this specimen we can see that the model performs largest than a no-skill model, given that the verism is whilom well-nigh 97.7 percent, in this specimen achieving an verism of well-nigh 98.8 percent.

Accuracy: 0.988 |

Line plots of the loss on the train and test sets are then created.

We can see that the model quickly finds a good fit on the dataset and does not towards to be over or underfitting.

Now that we have some idea of the learning dynamics for a simple MLP model on the dataset, we can squint at developing a increasingly robust evaluation of model performance on the dataset.

## Robust Model Evaluation

The k-fold cross-validation procedure can provide a increasingly reliable estimate of MLP performance, although it can be very slow.

This is considering k models must be fit and evaluated. This is not a problem when the dataset size is small, such as the cancer survival dataset.

We can use the StratifiedKFold matriculation and enumerate each fold manually, fit the model, evaluate it, and then report the midpoint of the evaluation scores at the end of the procedure.

1 2 3 4 5 6 7 8 9 10 11 | ... # prepare navigate validation kfold = KFold(10) # enumerate splits scores = list() for train_ix, test_ix in kfold.split(X, y): # fit and evaluate the model… ... ... # summarize all scores print(‘Mean Accuracy: %.3f (%.3f)’ % (mean(scores), std(scores))) |

We can use this framework to develop a reliable estimate of MLP model performance with our wiring configuration, and plane with a range of variegated data preparations, model architectures, and learning configurations.

It is important that we first ripened an understanding of the learning dynamics of the model on the dataset in the previous section surpassing using k-fold cross-validation to estimate the performance. If we started to tune the model directly, we might get good results, but if not, we might have no idea of why, e.g. that the model was over or under fitting.

If we make large changes to the model again, it is a good idea to go when and personize that the model is converging appropriately.

The well-constructed example of this framework to evaluate the wiring MLP model from the previous section is listed below.

1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 | # k-fold cross-validation of wiring model for the mammography dataset from numpy import mean from numpy import std from pandas import read_csv from sklearn.model_selection import StratifiedKFold from sklearn.preprocessing import LabelEncoder from sklearn.metrics import accuracy_score from tensorflow.keras import Sequential from tensorflow.keras.layers import Dense from matplotlib import pyplot # load the dataset path = ‘https://raw.githubusercontent.com/jbrownlee/Datasets/master/mammography.csv’ df = read_csv(path, header=None) # split into input and output columns X, y = df.values[:, :–1], df.values[:, –1] # ensure all data are floating point values X = X.astype(‘float32’) # encode strings to integer y = LabelEncoder().fit_transform(y) # prepare navigate validation kfold = StratifiedKFold(10, random_state=1) # enumerate splits scores = list() for train_ix, test_ix in kfold.split(X, y): # split data X_train, X_test, y_train, y_test = X[train_ix], X[test_ix], y[train_ix], y[test_ix] # determine the number of input features n_features = X.shape[1] # pinpoint model model = Sequential() model.add(Dense(50, activation=‘relu’, kernel_initializer=‘he_normal’, input_shape=(n_features,))) model.add(Dense(1, activation=‘sigmoid’)) # compile the model model.compile(optimizer=‘adam’, loss=‘binary_crossentropy’) # fit the model model.fit(X_train, y_train, epochs=300, batch_size=32, verbose=0) # predict test set yhat = model.predict_classes(X_test) # evaluate predictions score = accuracy_score(y_test, yhat) print(‘>%.3f’ % score) scores.append(score) # summarize all scores print(‘Mean Accuracy: %.3f (%.3f)’ % (mean(scores), std(scores))) |

Running the example reports the model performance each iteration of the evaluation procedure and reports the midpoint and standard deviation of nomenclature verism at the end of the run.

**Note**: Your results may vary given the stochastic nature of the algorithm or evaluation procedure, or differences in numerical precision. Consider running the example a few times and compare the stereotype outcome.

In this case, we can see that the MLP model achieved a midpoint verism of well-nigh 98.7 percent, which is pretty tropical to our rough estimate in the previous section.

This confirms our expectation that the wiring model configuration may work largest than a naive model for this dataset

1 2 3 4 5 6 7 8 9 10 11 | >0.987 >0.986 >0.989 >0.987 >0.986 >0.988 >0.989 >0.989 >0.983 >0.988 Mean Accuracy: 0.987 (0.002) |

Next, let’s squint at how we might fit a final model and use it to make predictions.

## Final Model and Make Predictions

Once we segregate a model configuration, we can train a final model on all misogynist data and use it to make predictions on new data.

In this case, we will use the model with dropout and a small batch size as our final model.

We can prepare the data and fit the model as before, although on the unshortened dataset instead of a training subset of the dataset.

1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 | ... # split into input and output columns X, y = df.values[:, :–1], df.values[:, –1] # ensure all data are floating point values X = X.astype(‘float32’) # encode strings to integer le = LabelEncoder() y = le.fit_transform(y) # determine the number of input features n_features = X.shape[1] # pinpoint model model = Sequential() model.add(Dense(50, activation=‘relu’, kernel_initializer=‘he_normal’, input_shape=(n_features,))) model.add(Dense(1, activation=‘sigmoid’)) # compile the model model.compile(optimizer=‘adam’, loss=‘binary_crossentropy’) |

We can then use this model to make predictions on new data.

First, we can pinpoint a row of new data.

... # pinpoint a row of new data row = [0.23001961,5.0725783,–0.27606055,0.83244412,–0.37786573,0.4803223] |

Note: I took this row from the first row of the dataset and the expected label is a ‘-1’.

We can then make a prediction.

... # make prediction yhat = model.predict_classes([row]) |

Then capsize the transform on the prediction, so we can use or interpret the result in the correct label (which is just an integer for this dataset).

... # capsize transform to get label for class yhat = le.inverse_transform(yhat) |

And in this case, we will simply report the prediction.

... # report prediction print(‘Predicted: %s’ % (yhat[0])) |

Tying this all together, the well-constructed example of fitting a final model for the mammography dataset and using it to make a prediction on new data is listed below.

1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 | # fit a final model and make predictions on new data for the mammography dataset from pandas import read_csv from sklearn.preprocessing import LabelEncoder from sklearn.metrics import accuracy_score from tensorflow.keras import Sequential from tensorflow.keras.layers import Dense from tensorflow.keras.layers import Dropout # load the dataset path = ‘https://raw.githubusercontent.com/jbrownlee/Datasets/master/mammography.csv’ df = read_csv(path, header=None) # split into input and output columns X, y = df.values[:, :–1], df.values[:, –1] # ensure all data are floating point values X = X.astype(‘float32’) # encode strings to integer le = LabelEncoder() y = le.fit_transform(y) # determine the number of input features n_features = X.shape[1] # pinpoint model model = Sequential() model.add(Dense(50, activation=‘relu’, kernel_initializer=‘he_normal’, input_shape=(n_features,))) model.add(Dense(1, activation=‘sigmoid’)) # compile the model model.compile(optimizer=‘adam’, loss=‘binary_crossentropy’) # fit the model model.fit(X, y, epochs=300, batch_size=32, verbose=0) # pinpoint a row of new data row = [0.23001961,5.0725783,–0.27606055,0.83244412,–0.37786573,0.4803223] # make prediction yhat = model.predict_classes([row]) # capsize transform to get label for class yhat = le.inverse_transform(yhat) # report prediction print(‘Predicted: %s’ % (yhat[0])) |

Running the example fits the model on the unshortened dataset and makes a prediction for a each row of new data.

**Note**: Your results may vary given the stochastic nature of the algorithm or evaluation procedure, or differences in numerical precision. Consider running the example a few times and compare the stereotype outcome.

In this case, we can see that the model predicted a “-1” label for the input row.

Predicted: ‘-1’ |

## Further Reading

This section provides increasingly resources on the topic if you are looking to go deeper.

### Tutorials

## Summary

In this tutorial, you discovered how to develop a Multilayer Perceptron neural network model for the Wood’s Mammography nomenclature dataset.

Specifically, you learned:

- How to load and summarize the Wood’s Mammography dataset and use the results to suggest data preparations and model configurations to use.
- How to explore the learning dynamics of simple MLP models on the dataset.
- How to develop robust estimates of model performance, tune model performance and make predictions on new data.

**Do you have any questions?**

Ask your questions in the comments unelevated and I will do my weightier to answer.

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